MMCIFParser

class MMCIFParser(filename, mode='r')

Bases: Parser

Convert MMCIF file data into a dictionary representation. This implementation heavily relies on the atomium library [1].

References

[1]

Ireland, S. M., & Martin, A. C. R. (2020). atomium (Version 1.0.0) [Computer software]. https://doi.org/10.1093/bioinformatics/btaa072

Methods

MMCIFParser.get(key, default)	Retrieve a value from the internal data using a given key.
MMCIFParser.items()	List items available in internal dictionary.
MMCIFParser.keys()	List keys available in internal dictionary.
MMCIFParser.parse_input(lines)	Parse a list of lines from an MMCIF file and convert the data into a dictionary.
MMCIFParser.values()	List values available in internal dictionary.