PeakCallerRecursiveMasking.call_peaks#
- PeakCallerRecursiveMasking.call_peaks(scores, rotation_matrix, mask=None, min_score=None, rotations=None, rotation_mapping=None, **kwargs)[source]#
Call peaks in the score space.
- Parameters:
- scoresBackendArray
Data array of scores.
- rotation_matrixBackendArray
Rotation matrix.
- maskBackendArray, optional
Mask array, by default None.
- rotationsBackendArray, optional
Rotation space array, by default None.
- rotation_mappingDict optional
Dictionary mapping values in rotations to Euler angles. By default None
- min_scorefloat
Minimum score value to consider. If provided, superseeds limit given by
PeakCaller.num_peaks.
- Returns:
- Tuple[BackendArray, BackendArray]
Array of peak coordinates and peak details.
Notes
By default, scores are masked using a box with edge length self.min_distance. If mask is provided, elements around each peak will be multiplied by the mask values. If rotations and rotation_mapping is provided, the respective rotation will be applied to the mask, otherwise rotation_matrix is used.