CTFReconstructed#
- class CTFReconstructed(defocus_x=None, angles=None, opening_axis=2, tilt_axis=0, sampling_rate=1, acceleration_voltage=300000.0, spherical_aberration=27000000.0, amplitude_contrast=0.07, phase_shift=0, defocus_angle=0, defocus_y=None, flip_phase=True)[source]#
Bases:
CTF
Generate CTF filter for reconstructions.
Attributes
The acceleration voltage in Volts, defaults to 300e3.
The amplitude contrast, defaults to 0.07.
The tilt angles in degrees.
The defocus angle in radians, defaults to 0.
The defocus in x direction (in units of sampling rate).
The defocus value in y direction, defaults to None (in units of sampling rate).
Whether the returned CTF should be phase-flipped, defaults to True.
The microscope projection axis, defaults to 2 (z).
The phase shift in radians, defaults to 0.
The sampling rate, defaults to 1 Ångstrom / voxel.
The spherical aberration, defaults to 2.7e7 (in units of sampling rate).
The axis along which the tilt is applied, defaults to 0 (x).
Methods
CTFReconstructed.__call__
([return_real_fourier])This method provides the standard interface for creating of composable filter masks.
CTFReconstructed.from_file
(filename, **kwargs)Initialize
CTF
from file.