PeakCallerScipy

class PeakCallerScipy(shape, num_peaks=1000, min_distance=1, min_boundary_distance=0, min_score=None, max_score=None, batch_dims=None, shm_handler=None, **kwargs)

Bases: PeakCaller

Peak calling using skimage.feature.peak_local_max to compute local maxima.

Attributes

PeakCallerScipy.shareable

Indicate whether the analyzer can be shared across processes.

Methods

PeakCallerScipy.__call__(state, scores, ...)	Update the internal parameter store based on input array.
PeakCallerScipy.call_peaks(scores[, min_score])	Call peaks in the score space.
PeakCallerScipy.init_state()	Initialize the analyzer state.
PeakCallerScipy.merge([results])	Merge multiple instances of PeakCaller.
PeakCallerScipy.oversample_peaks(scores, ...)	Refines peaks positions in the corresponding score space.
PeakCallerScipy.result(state[, fast_shape, ...])	Finalize the analysis result with optional postprocessing.