Index Symbols | _ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | R | S | T | U | V | W | X | Z Symbols |project| module _ __call__() (AbstractAnalyzer method) (BandPass method) (BandPassReconstructed method) (Chamfer method) (ComposableFilter method) (Compose method) (CrossCorrelation method) (CTF method) (CTFReconstructed method) (Curve method) (Envelope method) (FLC method) (LaplaceCrossCorrelation method) (MaskedCrossCorrelation method) (MaxScoreOverRotations method) (MaxScoreOverRotationsConstrained method) (MaxScoreOverTranslations method) (MutualInformation method) (NormalizedCrossCorrelation method) (NormalizedCrossCorrelationMean method) (NormalVectorScore method) (PartialLeastSquareDifference method) (PeakCaller method) (PeakCallerFast method) (PeakCallerMaximumFilter method) (PeakCallerRecursiveMasking method) (PeakCallerScipy method) (PeakCallerSort method) (ReconstructFromTilt method) (Wedge method) (WedgeReconstructed method) A abs() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) absolute_minimum_deviation() (in module tme.extensions) AbstractAnalyzer (class in tme.analyzer) acceleration_voltage (CTF attribute) (CTFReconstructed attribute) add() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) add_backend() (BackendManager method) addat() (CupyBackend method) (JaxBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) adjust_box() (Density method) align_structures() (Structure class method) align_to_axis() (in module tme.rotations) align_vectors() (in module tme.rotations) alternate_location_indicator (Structure attribute) amplitude_contrast (CTF attribute) (CTFReconstructed attribute) angles (BandPass attribute) (CTF attribute) (CTFReconstructed attribute) (ReconstructFromTilt attribute) (Wedge attribute) (WedgeReconstructed attribute) apply_convolution_mode() (in module tme.matching_utils) arange() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) argsort() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) array_to_memmap() (in module tme.matching_utils) astigmatism_angle (CTF attribute) (CTFReconstructed attribute) astype() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) at() (CupyBackend static method) (JaxBackend static method) (MatchingBackend method) (MLXBackend static method) (NumpyFFTWBackend static method) (PytorchBackend static method) atom_coordinate (Structure attribute) atom_name (Structure attribute) atom_serial_number (Structure attribute) available_backends() (BackendManager method) B BackendManager (class in tme.backends) BandPass (class in tme.filters) BandPassReconstructed (class in tme.filters) base_complex (CCMemoryUsage attribute) (CORRMemoryUsage attribute) (CupyBackendMemoryUsage attribute) (FLCMemoryUsage attribute) (MaxScoreOverRotationsConstrainedMemoryUsage attribute) (MaxScoreOverRotationsMemoryUsage attribute) (MCCMemoryUsage attribute) (MemoryProfile attribute) (NumpyBackendMemoryUsage attribute) (PeakCallerMaximumFilterMemoryUsage attribute) base_float (CCMemoryUsage attribute) (CORRMemoryUsage attribute) (CupyBackendMemoryUsage attribute) (FLCMemoryUsage attribute) (MaxScoreOverRotationsConstrainedMemoryUsage attribute) (MaxScoreOverRotationsMemoryUsage attribute) (MCCMemoryUsage attribute) (MemoryProfile attribute) (NumpyBackendMemoryUsage attribute) (PeakCallerMaximumFilterMemoryUsage attribute) base_usage() (CCMemoryUsage method) (CORRMemoryUsage method) (CupyBackendMemoryUsage method) (FLCMemoryUsage method) (MatchingMemoryUsage method) (MaxScoreOverRotationsConstrainedMemoryUsage method) (MaxScoreOverRotationsMemoryUsage method) (MCCMemoryUsage method) (MemoryProfile method) (NumpyBackendMemoryUsage method) (PeakCallerMaximumFilterMemoryUsage method) box_mask() (in module tme.mask) C call_peaks() (PeakCaller method) (PeakCallerFast method) (PeakCallerMaximumFilter method) (PeakCallerRecursiveMasking method) (PeakCallerScipy method) (PeakCallerSort method) cam_setup() (in module tme.matching_scores) cc_setup() (in module tme.matching_scores) CCMemoryUsage (class in tme.memory) center_of_mass() (CupyBackend method) (Density method) (JaxBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) (Structure method) center_slice() (in module tme.matching_utils) centered() (Density method) chain_identifier (Structure attribute) Chamfer (class in tme.matching_optimization) change_backend() (BackendManager method) charge (Structure attribute) clip() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) close() (HDF5Loader method) code_for_residue_insertion (Structure attribute) compare_structures() (Structure class method) ComposableFilter (class in tme.filters) Compose (class in tme.filters) compute_convolution_shapes() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) compute_schedule() (in module tme.memory) concatenate() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) conditional_execute() (in module tme.matching_utils) copy() (CupyBackend method) (Density method) (JaxBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) (Structure method) core_mask() (Density method) correct_background() (AbstractAnalyzer method) (MaxScoreOverRotations method) (MaxScoreOverRotationsConstrained method) (MaxScoreOverTranslations method) (PeakCaller method) (PeakCallerFast method) (PeakCallerMaximumFilter method) (PeakCallerRecursiveMasking method) (PeakCallerScipy method) (PeakCallerSort method) correction_mode (CTF attribute) (CTFReconstructed attribute) CORRMemoryUsage (class in tme.memory) create_continuous_wedge (WedgeReconstructed attribute) create_mask() (in module tme.matching_utils) create_score_object() (in module tme.matching_optimization) CrossCorrelation (class in tme.matching_optimization) CTF (class in tme.filters) CTFReconstructed (class in tme.filters) CupyBackend (class in tme.backends) CupyBackendMemoryUsage (class in tme.memory) Curve (class in tme.filters) D data (Density property) datatype_bytes() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) defocus (CTF attribute) (CTFReconstructed attribute) defocus_delta (CTF attribute) (CTFReconstructed attribute) Density (class in tme.density) density_boundary() (Density method) deserialize() (in module tme.utils.serialization) details (Orientations attribute) device_count() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) distance_transform_edt() (PytorchBackend method) divide() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) dot() (CupyBackend method) (JaxBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) E einsum() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) element_symbol (Structure attribute) elliptical_mask() (in module tme.mask) empty (Density property) Envelope (class in tme.matching_optimization) eps() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) estimate_memory_usage() (in module tme.memory) euler_from_rotationmatrix() (in module tme.rotations) euler_to_rotationmatrix() (in module tme.rotations) eye() (PytorchBackend method) F fill() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) find_candidate_coordinates() (in module tme.extensions) find_candidate_indices() (in module tme.extensions) FLC (class in tme.matching_optimization) flc_scoring() (in module tme.matching_scores) flc_setup() (in module tme.matching_scores) FLCMemoryUsage (class in tme.memory) flcSphericalMask_setup() (in module tme.matching_scores) flip() (PytorchBackend method) fork_complex (CCMemoryUsage attribute) (CORRMemoryUsage attribute) (CupyBackendMemoryUsage attribute) (FLCMemoryUsage attribute) (MaxScoreOverRotationsConstrainedMemoryUsage attribute) (MaxScoreOverRotationsMemoryUsage attribute) (MCCMemoryUsage attribute) (MemoryProfile attribute) (NumpyBackendMemoryUsage attribute) (PeakCallerMaximumFilterMemoryUsage attribute) fork_float (CCMemoryUsage attribute) (CORRMemoryUsage attribute) (CupyBackendMemoryUsage attribute) (FLCMemoryUsage attribute) (MaxScoreOverRotationsConstrainedMemoryUsage attribute) (MaxScoreOverRotationsMemoryUsage attribute) (MCCMemoryUsage attribute) (MemoryProfile attribute) (NumpyBackendMemoryUsage attribute) (PeakCallerMaximumFilterMemoryUsage attribute) free_cache() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) frequency_cutoff (WedgeReconstructed attribute) from_file() (CTF class method) (CTFReconstructed class method) (Density class method) (Orientations class method) (Structure class method) (Wedge class method) (WedgeReconstructed class method) from_sharedarr() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) from_structure() (Density class method) full() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) G generate_tempfile_name() (in module tme.matching_utils) get() (GROParser method) (MDOCParser method) (MMCIFParser method) (Parser method) (PDBParser method) (StarParser method) (XMLParser method) get_available_memory() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) get_cone_rotations() (in module tme.rotations) get_extraction_slices() (Orientations method) get_fundamental_dtype() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) get_rotation_matrices() (in module tme.rotations) grad() (CrossCorrelation method) (LaplaceCrossCorrelation method) (NormalizedCrossCorrelation method) (NormalizedCrossCorrelationMean method) GROParser (class in tme.parser) H HDF5Loader (class in tme.utils.serialization) highpass (BandPass attribute) (BandPassReconstructed attribute) I identity() (CupyBackend method) (JaxBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) indices() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) init_state() (AbstractAnalyzer method) (MaxScoreOverRotations method) (MaxScoreOverRotationsConstrained method) (MaxScoreOverTranslations method) (PeakCaller method) (PeakCallerFast method) (PeakCallerMaximumFilter method) (PeakCallerRecursiveMasking method) (PeakCallerScipy method) (PeakCallerSort method) interpolation_order (ReconstructFromTilt attribute) irfftn() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) items() (GROParser method) (MDOCParser method) (MMCIFParser method) (Parser method) (PDBParser method) (StarParser method) (XMLParser method) J JaxBackend (class in tme.backends) K keys() (GROParser method) (MDOCParser method) (MMCIFParser method) (Parser method) (PDBParser method) (StarParser method) (XMLParser method) L LaplaceCrossCorrelation (class in tme.matching_optimization) lcc_setup() (in module tme.matching_scores) lowpass (BandPass attribute) (BandPassReconstructed attribute) M MaskedCrossCorrelation (class in tme.matching_optimization) match_densities() (Density class method) match_exhaustive() (in module tme.matching_exhaustive) match_structure_to_density() (Density class method) MatchingBackend (class in tme.backends) MatchingData (class in tme.matching_data) MatchingMemoryUsage (class in tme.memory) max() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) max_euclidean_distance() (in module tme.extensions) max_filter_coordinates() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) max_index_by_label() (in module tme.extensions) max_score_over_rotations() (CupyBackend method) (JaxBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) maximum() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) MaxScoreOverRotations (class in tme.analyzer) MaxScoreOverRotationsConstrained (class in tme.analyzer) MaxScoreOverRotationsConstrainedMemoryUsage (class in tme.memory) MaxScoreOverRotationsMemoryUsage (class in tme.memory) MaxScoreOverTranslations (class in tme.analyzer) mcc_scoring() (in module tme.matching_scores) mcc_setup() (in module tme.matching_scores) MCCMemoryUsage (class in tme.memory) MDOCParser (class in tme.parser) mean() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) membrane_mask() (in module tme.mask) memmap_to_array() (in module tme.matching_utils) MemoryProfile (class in tme.memory) merge() (AbstractAnalyzer class method) (MaxScoreOverRotations class method) (MaxScoreOverRotationsConstrained class method) (MaxScoreOverTranslations class method) (PeakCaller class method) (PeakCallerFast class method) (PeakCallerMaximumFilter class method) (PeakCallerRecursiveMasking class method) (PeakCallerScipy class method) (PeakCallerSort class method) metadata (Density property) (Structure attribute) method (ReconstructFromTilt attribute) min() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) minimum() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) minimum_enclosing_box() (Density method) (in module tme.matching_utils) MLXBackend (class in tme.backends) MMCIFParser (class in tme.parser) mod() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) module |project| tme.extensions multiply() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) MutualInformation (class in tme.matching_optimization) N ncc_scoring() (in module tme.matching_scores) ncc_setup() (in module tme.matching_scores) norm_scores() (CupyBackend method) (JaxBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) normal_vectors() (Density method) NormalizedCrossCorrelation (class in tme.matching_optimization) NormalizedCrossCorrelationMean (class in tme.matching_optimization) NormalVectorScore (class in tme.matching_optimization) NumpyBackendMemoryUsage (class in tme.memory) NumpyFFTWBackend (class in tme.backends) O occupancy (Structure attribute) online_statistics() (in module tme.extensions) opening_axis (BandPass attribute) (CTF attribute) (CTFReconstructed attribute) (ReconstructFromTilt attribute) (Wedge attribute) (WedgeReconstructed attribute) optimize_match() (in module tme.matching_optimization) Orientations (class in tme.orientations) origin (Density property) oversample_peaks() (PeakCaller static method) (PeakCallerFast static method) (PeakCallerMaximumFilter static method) (PeakCallerRecursiveMasking static method) (PeakCallerScipy static method) (PeakCallerSort static method) P pad() (Density method) parse_input() (GROParser method) (MDOCParser method) (MMCIFParser method) (Parser method) (PDBParser method) (StarParser method) (XMLParser method) PartialLeastSquareDifference (class in tme.matching_optimization) PDBParser (class in tme.parser) PeakCaller (class in tme.analyzer) PeakCallerFast (class in tme.analyzer) PeakCallerMaximumFilter (class in tme.analyzer) PeakCallerMaximumFilterMemoryUsage (class in tme.memory) PeakCallerRecursiveMasking (class in tme.analyzer) PeakCallerScipy (class in tme.analyzer) PeakCallerSort (class in tme.analyzer) per_fork() (CCMemoryUsage method) (CORRMemoryUsage method) (CupyBackendMemoryUsage method) (FLCMemoryUsage method) (MatchingMemoryUsage method) (MaxScoreOverRotationsConstrainedMemoryUsage method) (MaxScoreOverRotationsMemoryUsage method) (MCCMemoryUsage method) (MemoryProfile method) (NumpyBackendMemoryUsage method) (PeakCallerMaximumFilterMemoryUsage method) phase_shift (CTF attribute) (CTFReconstructed attribute) power() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) PytorchBackend (class in tme.backends) R ReconstructFromTilt (class in tme.filters) reconstruction_filter (ReconstructFromTilt attribute) record_type (Structure attribute) register_matching_exhaustive() (in module tme.matching_exhaustive) register_memory() (in module tme.memory) repeat() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) resample() (Density method) reshape() (CupyBackend method) (JaxBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) residue_name (Structure attribute) residue_sequence_number (Structure attribute) result() (AbstractAnalyzer method) (MaxScoreOverRotations method) (MaxScoreOverRotationsConstrained method) (MaxScoreOverTranslations method) (PeakCaller method) (PeakCallerFast method) (PeakCallerMaximumFilter method) (PeakCallerRecursiveMasking method) (PeakCallerScipy method) (PeakCallerSort method) reverse() (CupyBackend static method) (JaxBackend static method) (MatchingBackend method) (MLXBackend static method) (NumpyFFTWBackend static method) (PytorchBackend method) rfftn() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) rigid_transform() (CupyBackend method) (Density method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) (Structure method) roll() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) rotations (MatchingData property) (Orientations attribute) S sampling_rate (BandPass attribute) (BandPassReconstructed attribute) (CTF attribute) (CTFReconstructed attribute) (Density property) (Wedge attribute) (WedgeReconstructed attribute) scan() (JaxBackend method) score() (Chamfer method) (CrossCorrelation method) (Envelope method) (FLC method) (LaplaceCrossCorrelation method) (MaskedCrossCorrelation method) (MutualInformation method) (NormalizedCrossCorrelation method) (NormalizedCrossCorrelationMean method) (NormalVectorScore method) (PartialLeastSquareDifference method) score_angles() (Chamfer method) (CrossCorrelation method) (Envelope method) (FLC method) (LaplaceCrossCorrelation method) (MaskedCrossCorrelation method) (MutualInformation method) (NormalizedCrossCorrelation method) (NormalizedCrossCorrelationMean method) (NormalVectorScore method) (PartialLeastSquareDifference method) score_translation() (Chamfer method) (CrossCorrelation method) (Envelope method) (FLC method) (LaplaceCrossCorrelation method) (MaskedCrossCorrelation method) (MutualInformation method) (NormalizedCrossCorrelation method) (NormalizedCrossCorrelationMean method) (NormalVectorScore method) (PartialLeastSquareDifference method) scores (Orientations attribute) scramble_phases() (in module tme.matching_utils) segment_identifier (Structure attribute) serialize() (in module tme.utils.serialization) set_device() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) set_matching_dimension() (MatchingData method) shape (Density property) shareable (AbstractAnalyzer property) (MaxScoreOverRotations property) (MaxScoreOverRotationsConstrained property) (MaxScoreOverTranslations property) (PeakCaller property) (PeakCallerFast property) (PeakCallerMaximumFilter property) (PeakCallerRecursiveMasking property) (PeakCallerScipy property) (PeakCallerSort property) size() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) spectrum (Curve attribute) spherical_aberration (CTF attribute) (CTFReconstructed attribute) split_shape() (in module tme.matching_utils) sqrt() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) square() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) ssum() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) stack() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) standardize() (in module tme.matching_utils) StarParser (class in tme.parser) std() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) Structure (class in tme.structure) subset_array() (MatchingData method) subset_by_chain() (Structure method) subset_by_range() (Structure method) subset_by_slice() (MatchingData method) subtract() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) sum() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) surface_coordinates() (Density method) T target (MatchingData property) target_mask (MatchingData property) temperature_factor (Structure attribute) template (MatchingData property) template_mask (MatchingData property) tilt_axis (BandPass attribute) (CTF attribute) (CTFReconstructed attribute) (ReconstructFromTilt attribute) (Wedge attribute) (WedgeReconstructed attribute) tme.extensions module to_backend() (MatchingData method) to_backend_array() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) to_cpu_array() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) to_file() (Density method) (Orientations method) (Structure method) to_memmap() (Density method) to_numpy() (Density method) to_numpy_array() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) to_pointcloud() (Density method) to_sharedarr() (CupyBackend static method) (JaxBackend static method) (MatchingBackend method) (MLXBackend static method) (NumpyFFTWBackend method) (PytorchBackend method) to_volume() (Structure method) tobytes() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) topk_indices() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) topleft_pad() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) translations (Orientations attribute) transpose() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) tril() (PytorchBackend method) tril_indices() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) trim_box() (Density method) triu_indices() (PytorchBackend method) tube_mask() (in module tme.mask) U unique() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) unravel_index() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) use_gaussian (BandPass attribute) (BandPassReconstructed attribute) use_tilt (Wedge attribute) (WedgeReconstructed attribute) V values() (GROParser method) (MDOCParser method) (MMCIFParser method) (Parser method) (PDBParser method) (StarParser method) (XMLParser method) W Wedge (class in tme.filters) WedgeReconstructed (class in tme.filters) weight_type (Wedge attribute) (WedgeReconstructed attribute) weight_wedge (WedgeReconstructed attribute) weights (Wedge attribute) (WedgeReconstructed attribute) where() (CupyBackend method) (JaxBackend method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend method) (PytorchBackend method) wiener_falloff (CTF attribute) (CTFReconstructed attribute) X XMLParser (class in tme.parser) Z zeros() (CupyBackend method) (JaxBackend static method) (MatchingBackend method) (MLXBackend method) (NumpyFFTWBackend static method) (PytorchBackend method)