PeakCallerRecursiveMasking

class PeakCallerRecursiveMasking(shape, num_peaks=1000, min_distance=1, min_boundary_distance=0, min_score=None, max_score=None, batch_dims=None, shm_handler=None, **kwargs)

Bases: PeakCaller

Identifies peaks iteratively by selecting the top score and masking a region around it.

Attributes

PeakCallerRecursiveMasking.shareable

Indicate whether the analyzer can be shared across processes.

Methods

PeakCallerRecursiveMasking.__call__(state, ...)	Update the internal parameter store based on input array.
PeakCallerRecursiveMasking.call_peaks(...[, ...])	Call peaks in the score space.
PeakCallerRecursiveMasking.init_state()	Initialize the analyzer state.
PeakCallerRecursiveMasking.merge([results])	Merge multiple instances of PeakCaller.
PeakCallerRecursiveMasking.oversample_peaks(...)	Refines peaks positions in the corresponding score space.
PeakCallerRecursiveMasking.result(state[, ...])	Finalize the analysis result with optional postprocessing.