PeakCallerScipy#
- class PeakCallerScipy(number_of_peaks=1000, min_distance=1, min_boundary_distance=0, batch_dims=None, minimum_score=None, maximum_score=None, **kwargs)[source]#
Bases:
PeakCaller
Peak calling using
skimage.feature.peak_local_max
to compute local maxima.Methods
PeakCallerScipy.call_peaks
(scores[, ...])Call peaks in the score space.
PeakCallerScipy.merge
([candidates])Merge multiple instances of
PeakCaller
.PeakCallerScipy.oversample_peaks
(scores, ...)Refines peaks positions in the corresponding score space.