PeakCallerScipy#

class PeakCallerScipy(number_of_peaks=1000, min_distance=1, min_boundary_distance=0, batch_dims=None, minimum_score=None, maximum_score=None, **kwargs)[source]#

Bases: PeakCaller

Peak calling using skimage.feature.peak_local_max to compute local maxima.

Methods

PeakCallerScipy.call_peaks(scores[, ...])

Call peaks in the score space.

PeakCallerScipy.merge([candidates])

Merge multiple instances of PeakCaller.

PeakCallerScipy.oversample_peaks(scores, ...)

Refines peaks positions in the corresponding score space.