PeakCallerFast

class PeakCallerFast(number_of_peaks=1000, min_distance=1, min_boundary_distance=0, batch_dims=None, minimum_score=None, maximum_score=None, **kwargs)

Bases: PeakCaller

Subdivides the score space into squares with edge length min_distance and determiens maximum value for each. In a second pass, all local maxima that are not the local maxima in a min_distance square centered around them are removed.

Methods

PeakCallerFast.call_peaks(scores, **kwargs)	Call peaks in the score space.
PeakCallerFast.merge([candidates])	Merge multiple instances of PeakCaller.
PeakCallerFast.oversample_peaks(scores, ...)	Refines peaks positions in the corresponding score space.