Practical Example

In the following we will demonstrate common preprocessing routines using the API and the GUI. As basis we will use template matching of 80S ribosomes on an S. pombe tomogram

1. Tomogram TS_037 from EMPIAR-10988 [1].

2. 80S average EMD-3228.

• Using the API
• Using the GUI
  • Filtering
  • Masking

References

[1]

de Teresa-Trueba, I.; Goetz, S. K.; Mattausch, A.; Stojanovska, F.; Zimmerli, C. E.; Toro-Nahuelpan, M.; Cheng, D. W. C.; Tollervey, F.; Pape, C.; Beck, M.; Diz-Munoz, A.; Kreshuk, A.; Mahamid, J.; Zaugg, J. B. Convolutional networks for supervised mining of molecular patterns within cellular context. Nat. Methods 2023, 20, 284–294.