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Get Started

  • Installation

Template Matching

  • Motivation
  • Practical Example
    • Picking Ribosomes
    • Constrained Template Matching
    • Fitting Atomic Structures
    • Alignment of Densities
  • Cluster Execution
  • Summary

Postprocessing

  • Motivation
  • Practical Example
  • Summary

Further Reading

  • Masking
  • Filtering Techniques
  • Using the GUI

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  • Practical Example

Practical Example#

The following outlines potential applications for template matching using match_template.py.

match_template.py -h
  • Picking Ribosomes
    • Data Acquisition
    • Template and Mask Generation
    • Template Matching
    • Parameter Comparison
    • Remarks on Tomogram Preprocessing
    • Next Steps
    • References
  • Constrained Template Matching
    • Prerequisites
    • Data Structure
    • Generating Seed Points
    • Creating Templates
    • Creating Template Masks
    • Template Matching
    • Analysis
    • References
  • Fitting Atomic Structures
  • Alignment of Densities

You will learn how to analyze the output of these experiments in the postprocession section.

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