API

Data Structures

• Geometry
  • Constructor
    • mosaic.geometry.Geometry
      • Geometry
        • Geometry.__init__()
  • Core Data Properties
    • mosaic.geometry.Geometry.points
      • Geometry.points
    • mosaic.geometry.Geometry.normals
      • Geometry.normals
    • mosaic.geometry.Geometry.quaternions
      • Geometry.quaternions
    • mosaic.geometry.Geometry.sampling_rate
      • Geometry.sampling_rate
    • mosaic.geometry.Geometry.model
      • Geometry.model
    • mosaic.geometry.Geometry.actor
      • Geometry.actor
    • mosaic.geometry.Geometry.visible
      • Geometry.visible
  • Visualization Control
    • mosaic.geometry.Geometry.set_color
      • Geometry.set_color()
    • mosaic.geometry.Geometry.set_visibility
      • Geometry.set_visibility()
    • mosaic.geometry.Geometry.set_appearance
      • Geometry.set_appearance()
    • mosaic.geometry.Geometry.change_representation
      • Geometry.change_representation()
    • mosaic.geometry.Geometry.is_mesh_representation
      • Geometry.is_mesh_representation()
  • Point Coloring
    • mosaic.geometry.Geometry.color_points
      • Geometry.color_points()
    • mosaic.geometry.Geometry.set_scalars
      • Geometry.set_scalars()
  • Data Manipulation
    • mosaic.geometry.Geometry.swap_data
      • Geometry.swap_data()
    • mosaic.geometry.Geometry.merge
      • Geometry.merge()
    • mosaic.geometry.Geometry.subset
      • Geometry.subset()
    • mosaic.geometry.Geometry.get_point_data
      • Geometry.get_point_data()
  • Utility Functions
    • mosaic.geometry.Geometry.get_number_of_points
      • Geometry.get_number_of_points()
    • mosaic.geometry.Geometry.compute_distance
      • Geometry.compute_distance()
  • Serialization
    • mosaic.geometry.Geometry.__getstate__
      • Geometry.__getstate__()
    • mosaic.geometry.Geometry.__setstate__
      • Geometry.__setstate__()
  • Indexing
• VolumeGeometry
  • Constructor
    • mosaic.geometry.VolumeGeometry
      • VolumeGeometry
        • VolumeGeometry.__init__()
  • Volume Operations
    • mosaic.geometry.VolumeGeometry.update_isovalue
      • VolumeGeometry.update_isovalue()
    • mosaic.geometry.VolumeGeometry.update_isovalue_quantile
      • VolumeGeometry.update_isovalue_quantile()
    • mosaic.geometry.VolumeGeometry.set_appearance
      • VolumeGeometry.set_appearance()
• GeometryTrajectory
  • Constructor
    • mosaic.geometry.GeometryTrajectory
      • GeometryTrajectory
        • GeometryTrajectory.__init__()
  • Trajectory Control
    • mosaic.geometry.GeometryTrajectory.frames
      • GeometryTrajectory.frames
    • mosaic.geometry.GeometryTrajectory.display_frame
      • GeometryTrajectory.display_frame()
• DataContainer
  • Constructor
    • mosaic.container.DataContainer
      • DataContainer
        • DataContainer.__init__()
  • Data Access and Management
    • mosaic.container.DataContainer.add
      • DataContainer.add()
    • mosaic.container.DataContainer.remove
      • DataContainer.remove()
    • mosaic.container.DataContainer.get
      • DataContainer.get()
    • mosaic.container.DataContainer.update
      • DataContainer.update()
    • mosaic.container.DataContainer.clear
      • DataContainer.clear()
    • mosaic.container.DataContainer.get_actors
      • DataContainer.get_actors()
  • UUID Resolution
    • mosaic.container.DataContainer.uuid_to_index
      • DataContainer.uuid_to_index()
  • Visualization Control
    • mosaic.container.DataContainer.highlight
      • DataContainer.highlight()
    • mosaic.container.DataContainer.highlight_points
      • DataContainer.highlight_points()
    • mosaic.container.DataContainer.update_appearance
      • DataContainer.update_appearance()
  • Container Length
• MosaicData
  • Constructor
    • mosaic.data.MosaicData
      • MosaicData
        • MosaicData.__init__()
  • Core Data Containers
  • User Interaction Management
    • mosaic.data.MosaicData.swap_area_picker
      • MosaicData.swap_area_picker()
    • mosaic.data.MosaicData.activate_viewing_mode
      • MosaicData.activate_viewing_mode()
    • mosaic.data.MosaicData.highlight_clusters_from_selected_points
      • MosaicData.highlight_clusters_from_selected_points()
  • Session Persistence
    • mosaic.data.MosaicData.to_file
      • MosaicData.to_file()
    • mosaic.data.MosaicData.load_session
      • MosaicData.load_session()
  • Utilities
    • mosaic.data.MosaicData.format_datalist
      • MosaicData.format_datalist()
• DataContainerInteractor
  • Constructor
    • mosaic.interactor.DataContainerInteractor
      • DataContainerInteractor
        • DataContainerInteractor.__init__()
  • Interaction Modes
    • mosaic.interactor.DataContainerInteractor.attach_area_picker
      • DataContainerInteractor.attach_area_picker()
    • mosaic.interactor.DataContainerInteractor.activate_viewing_mode
      • DataContainerInteractor.activate_viewing_mode()
  • Selection Management
    • mosaic.interactor.DataContainerInteractor.set_selection_by_uuid
      • DataContainerInteractor.set_selection_by_uuid()
    • mosaic.interactor.DataContainerInteractor.deselect
      • DataContainerInteractor.deselect()
    • mosaic.interactor.DataContainerInteractor.deselect_points
      • DataContainerInteractor.deselect_points()
    • mosaic.interactor.DataContainerInteractor.highlight_selected_points
      • DataContainerInteractor.highlight_selected_points()
    • mosaic.interactor.DataContainerInteractor.highlight_clusters_from_selected_points
      • DataContainerInteractor.highlight_clusters_from_selected_points()
  • Data Management
    • mosaic.interactor.DataContainerInteractor.add
      • DataContainerInteractor.add()
    • mosaic.interactor.DataContainerInteractor.merge
      • DataContainerInteractor.merge()
    • mosaic.interactor.DataContainerInteractor.remove
      • DataContainerInteractor.remove()
  • Geometry Operations
    • mosaic.interactor.DataContainerInteractor.cluster
      • DataContainerInteractor.cluster()
    • mosaic.interactor.DataContainerInteractor.remove_outliers
      • DataContainerInteractor.remove_outliers()
    • mosaic.interactor.DataContainerInteractor.downsample
      • DataContainerInteractor.downsample()
    • mosaic.interactor.DataContainerInteractor.duplicate
      • DataContainerInteractor.duplicate()
  • Visualization Control
    • mosaic.interactor.DataContainerInteractor.change_representation
      • DataContainerInteractor.change_representation()
    • mosaic.interactor.DataContainerInteractor.render
      • DataContainerInteractor.render()
    • mosaic.interactor.DataContainerInteractor.render_vtk
      • DataContainerInteractor.render_vtk()

Processing

• Operations
  • Decorator
    • mosaic.operations.use_point_data
      • use_point_data()
  • Point Cloud Processing
    • mosaic.operations.downsample
      • downsample()
    • mosaic.operations.remove_outliers
      • remove_outliers()
    • mosaic.operations.skeletonize
      • skeletonize()
    • mosaic.operations.crop
      • crop()
  • Clustering
    • mosaic.operations.cluster
      • cluster()
  • Normal Computation
    • mosaic.operations.compute_normals
      • compute_normals()
  • Surface Fitting
    • mosaic.operations.fit
      • fit()
    • mosaic.operations.sample
      • sample()
  • Mesh Operations
    • mosaic.operations.remesh
      • remesh()
    • mosaic.operations.smooth
      • smooth()
  • Utility Functions
    • mosaic.operations.duplicate
      • duplicate()
    • mosaic.operations.visibility
      • visibility()
  • Operation Registry
    • mosaic.operations.GeometryOperations
      • GeometryOperations
        • GeometryOperations.__init__()
• Parametrization
  • Base Class
    • mosaic.parametrization.Parametrization
      • Parametrization
        • Parametrization.__init__()
  • Geometric Shapes
    • mosaic.parametrization.Sphere
      • Sphere
        • Sphere.__init__()
    • mosaic.parametrization.Ellipsoid
      • Ellipsoid
        • Ellipsoid.__init__()
    • mosaic.parametrization.Cylinder
      • Cylinder
        • Cylinder.__init__()
    • mosaic.parametrization.RBF
      • RBF
        • RBF.__init__()
    • mosaic.parametrization.SplineCurve
      • SplineCurve
        • SplineCurve.__init__()
  • Triangular Meshes
    • mosaic.parametrization.TriangularMesh
      • TriangularMesh
        • TriangularMesh.__init__()
    • mosaic.parametrization.PoissonMesh
      • PoissonMesh
        • PoissonMesh.__init__()
    • mosaic.parametrization.ClusteredBallPivotingMesh
      • ClusteredBallPivotingMesh
        • ClusteredBallPivotingMesh.__init__()
    • mosaic.parametrization.ConvexHull
      • ConvexHull
        • ConvexHull.__init__()
  • Isosurface Methods
    • mosaic.parametrization.FlyingEdges
      • FlyingEdges
        • FlyingEdges.__init__()
    • mosaic.parametrization.MarchingCubes
      • MarchingCubes
        • MarchingCubes.__init__()
  • Utilities
    • mosaic.parametrization.merge
      • merge()
  • Type Registry
• Parallel
  • BackgroundTaskManager
    • mosaic.parallel.BackgroundTaskManager
      • BackgroundTaskManager
        • BackgroundTaskManager.__init__()
    • Signals
  • Convenience Functions
    • mosaic.parallel.submit_task
      • submit_task()
    • mosaic.parallel.submit_task_batch
      • submit_task_batch()
  • Usage Example

File I/O

• Formats
  • Core Functions
    • mosaic.formats.open_file
      • open_file()
    • mosaic.formats.open_session
      • open_session()
  • Data Container Classes
  • Writers
    • mosaic.formats.OrientationsWriter
      • OrientationsWriter
        • OrientationsWriter.__init__()
    • mosaic.formats.write_density
      • write_density()
• Parser
  • Density Loading
    • mosaic.formats.parser.load_density
      • load_density()
  • Volume Processing

GUI

• Widgets
  • Core Interface Components
    • mosaic.widgets.ObjectBrowserSidebar
      • ObjectBrowserSidebar
        • ObjectBrowserSidebar.__init__()
    • mosaic.widgets.RibbonToolBar
      • RibbonToolBar
        • RibbonToolBar.__init__()
    • mosaic.widgets.ContainerListWidget
      • ContainerListWidget
    • mosaic.widgets.StyledListWidgetItem
      • StyledListWidgetItem
  • 3D Visualization Widgets
    • mosaic.widgets.AxesWidget
      • AxesWidget
        • AxesWidget.__init__()
    • mosaic.widgets.ScaleBarWidget
      • ScaleBarWidget
        • ScaleBarWidget.__init__()
    • mosaic.widgets.LegendWidget
      • LegendWidget
        • LegendWidget.__init__()
  • Volume and Time-series
    • mosaic.widgets.MultiVolumeViewer
      • MultiVolumeViewer
        • MultiVolumeViewer.__init__()
    • mosaic.widgets.TrajectoryPlayer
      • TrajectoryPlayer
        • TrajectoryPlayer.__init__()
  • Interaction Control
    • mosaic.widgets.ViewerModes
      • ViewerModes
        • ViewerModes.__init__()
    • mosaic.widgets.CursorModeHandler
      • CursorModeHandler
        • CursorModeHandler.__init__()
    • mosaic.widgets.StatusIndicator
      • StatusIndicator
        • StatusIndicator.__init__()
  • Ribbon Utilities
    • mosaic.widgets.create_button
      • create_button()
• Dialogs
  • Data Import/Export
    • mosaic.dialogs.ImportDataDialog
      • ImportDataDialog
        • ImportDataDialog.__init__()
    • mosaic.dialogs.ExportDialog
      • ExportDialog
        • ExportDialog.__init__()
  • Analysis Dialogs
    • mosaic.dialogs.PropertyAnalysisDialog
      • PropertyAnalysisDialog
        • PropertyAnalysisDialog.__init__()
    • mosaic.dialogs.HistogramDialog
      • HistogramDialog
        • HistogramDialog.__init__()
    • mosaic.dialogs.GeometryPropertiesDialog
      • GeometryPropertiesDialog
        • GeometryPropertiesDialog.__init__()
  • Processing Configuration
    • mosaic.dialogs.MeshEquilibrationDialog
      • MeshEquilibrationDialog
        • MeshEquilibrationDialog.__init__()
    • mosaic.dialogs.HMFFDialog
      • HMFFDialog
        • HMFFDialog.__init__()
    • mosaic.dialogs.TemplateMatchingDialog
      • TemplateMatchingDialog
        • TemplateMatchingDialog.__init__()
    • mosaic.dialogs.MeshMappingDialog
      • MeshMappingDialog
        • MeshMappingDialog.__init__()
  • Utility Dialogs
    • mosaic.dialogs.ProgressDialog
      • ProgressDialog
        • ProgressDialog.__init__()
    • mosaic.dialogs.TiltControlDialog
      • TiltControlDialog
        • TiltControlDialog.__init__()
  • Distance Operations
    • mosaic.dialogs.DistanceCropDialog
      • DistanceCropDialog
        • DistanceCropDialog.__init__()
• Tabs
  • Main Tab Classes
    • mosaic.tabs.SegmentationTab
      • SegmentationTab
        • SegmentationTab.__init__()
    • mosaic.tabs.ModelTab
      • ModelTab
        • ModelTab.__init__()
    • mosaic.tabs.IntelligenceTab
      • IntelligenceTab
        • IntelligenceTab.__init__()
  • Segmentation Operations
    • mosaic.tabs.SegmentationTab.show_ribbon
      • SegmentationTab.show_ribbon()
  • Modeling Operations
    • mosaic.tabs.ModelTab.show_ribbon
      • ModelTab.show_ribbon()
  • Intelligence Operations
    • mosaic.tabs.IntelligenceTab.show_ribbon
      • IntelligenceTab.show_ribbon()
• Interaction Styles
  • Mesh Editing
    • mosaic.styles.MeshEditInteractorStyle
      • MeshEditInteractorStyle
        • MeshEditInteractorStyle.__init__()
  • Curve Creation
    • mosaic.styles.CurveBuilderInteractorStyle
      • CurveBuilderInteractorStyle
        • CurveBuilderInteractorStyle.__init__()