mosaic.geometry.VolumeGeometry#

class VolumeGeometry(volume=None, volume_sampling_rate=array([1., 1., 1.]), target_resolution=10.0, **kwargs)[source]#

Geometry class specialized for 3D volume rendering with isosurfaces.

Parameters:

volumenp.ndarray, optional: 3D volume data array.
volume_sampling_ratenp.ndarray, optional: Sampling rates for volume data, by default ones(3).
target_resolutionfloat, optional: Target physical resolution for lowpass filtering. Set to 0 to disable filtering. By default 10.0 (Angstroms).
**kwargs: Additional keyword arguments passed to parent Geometry class.

__init__(volume=None, volume_sampling_rate=array([1., 1., 1.]), target_resolution=10.0, **kwargs)[source]#

Methods

`__init__`([volume, volume_sampling_rate, ...])
`change_representation`([representation])	Change the visual representation mode of the geometry.
`color_points`(point_ids, color)	Color specific points in the geometry using set_scalars backend.
`get_number_of_points`()	Get total number of points in the geometry.
`get_point_data`()
`is_mesh_representation`([representation])
`merge`(geometries)	Merge multiple geometry objects into a single geometry.
`set_appearance`(**kwargs)	Set visual appearance properties of the geometry.
`set_color`([color])	Set uniform color for all points in the geometry.
`set_scalars`(scalars, color_lut[, ...])	Set scalar data for coloring points.
`set_visibility`([visibility])	Set geometry visibility in the scene.
`subset`(idx[, copy])
`swap_data`(points[, normals, faces, ...])	Replace geometry data with new point cloud or mesh data.
`update_isovalue`(upper[, lower])	Update the isovalue for volume surface rendering.
`update_isovalue_quantile`(upper_quantile[, ...])	Update isovalue using quantile-based thresholds.
`update_target_resolution`(resolution)	Update the target physical resolution for lowpass filtering.

Attributes

`actor`	VTK actor object for rendering.
`geometry_type`	Return a descriptive type of the current instance
`model`
`normals`	Normal vectors at each point.
`points`	3D point coordinates of the geometry.
`quaternions`	Orientation quaternions for each point.
`sampling_rate`
`vertex_properties`
`visible`	Visibility state of the geometry.