mosaic.geometry.VolumeGeometry#

class VolumeGeometry(volume=None, volume_sampling_rate=array([1., 1., 1.]), **kwargs)[source]#

Geometry class specialized for 3D volume rendering with isosurfaces.

Parameters:

volumenp.ndarray, optional: 3D volume data array.
volume_sampling_ratenp.ndarray, optional: Sampling rates for volume data, by default ones(3).
**kwargs: Additional keyword arguments passed to parent Geometry class.

__init__(volume=None, volume_sampling_rate=array([1., 1., 1.]), **kwargs)[source]#

Methods

`__init__`([volume, volume_sampling_rate])
`change_representation`([representation])	Change the visual representation mode of the geometry.
`color_points`(point_ids, color)	Color specific points in the geometry using set_scalars backend.
`compute_distance`(query_points[, k])
`get_number_of_points`()	Get total number of points in the geometry.
`merge`(geometries)	Merge multiple geometry objects into a single geometry.
`set_appearance`([isovalue_percentile])	Set visual appearance properties of the geometry.
`set_color`([color])	Set uniform color for all points in the geometry.
`set_scalars`(scalars, color_lut[, ...])	Set scalar data for coloring points.
`set_visibility`([visibility])	Set geometry visibility in the scene.
`swap_data`(points[, normals, faces, ...])	Replace geometry data with new point cloud or mesh data.
`update_isovalue`(upper[, lower])	Update the isovalue for volume surface rendering.
`update_isovalue_quantile`(upper_quantile[, ...])	Update isovalue using quantile-based thresholds.

Attributes

`actor`	VTK actor object for rendering.
`normals`	Normal vectors at each point.
`points`	3D point coordinates of the geometry.
`quaternions`	Orientation quaternions for each point.
`sampling_rate`
`vertex_properties`
`visible`	Visibility state of the geometry.