Integrations#
The output of pytme can be readily integrated with the refinement, classification and averaging procedures of existing software.
pytme defines Orientations, which can convert the tsv-based format produced with postprocess.py and --output_format orientations, into a range of available formats, such as star files. This enables compatibility with a range of software and is achieved as follows
from tme import Orientations
orientations = Orientations.from_file("orientations.tsv")
orientations.to_file("orientations.star", name = "/path/to/your/tomogram")
The following sections are dedicated to integrations with specific software