ColabSegNapariWidget

class ColabSegNapariWidget(viewer, colabsegdata_instance, display_pixel_size=None)

A widget for napari viewer to manage and visualize data from ColabSegData instances.

Parameters:

viewernapari.Viewer

The napari viewer instance to which this widget will be added.

colabsegdata_instancecolabseg.new_gui_functions.ColabSegData, optional

An instance of ColabSegData containing the data to be visualized.

Attributes:

viewernapari.Viewer

The napari viewer instance.

pixel_sizefloat

Pixel size of the data, obtained from colabsegdata_instance.

dropdownmagicgui.widgets.ComboBox

Dropdown menu for selecting clusters to highlight.

_previous_selectionstr or None

The previously selected cluster name.

Attributes

ColabSegNapariWidget.NO_VALUE
ColabSegNapariWidget.annotation	Return type annotation for the parameter represented by the widget.
ColabSegNapariWidget.changed
ColabSegNapariWidget.enabled	Whether widget is enabled (editable).
ColabSegNapariWidget.height	Return the current height of the widget.
ColabSegNapariWidget.label	Return a label to use for this widget when present in Containers.
ColabSegNapariWidget.label_changed
ColabSegNapariWidget.labels	Whether widgets are presented with labels.
ColabSegNapariWidget.layout	Return the layout of the widget.
ColabSegNapariWidget.margins	Return margin between the content and edges of the container.
ColabSegNapariWidget.max_height	Get the maximum height of the widget.
ColabSegNapariWidget.max_width	Get the maximum width of the widget.
ColabSegNapariWidget.min_height	Get the minimum height of the widget.
ColabSegNapariWidget.min_width	Get the minimum width of the widget.
ColabSegNapariWidget.native	Return native backend widget.
ColabSegNapariWidget.native_parent_changed
ColabSegNapariWidget.options	Return options currently being used in this widget.
ColabSegNapariWidget.orientation	Orientation of the widget.
ColabSegNapariWidget.param_kind	Return inspect.Parameter.kind represented by this widget.
ColabSegNapariWidget.parent	Return the parent widget.
ColabSegNapariWidget.parent_changed	Signal emitted when the parent of the widget changes.
ColabSegNapariWidget.root_native_widget	Return the root native backend widget.
ColabSegNapariWidget.tooltip	Get the tooltip for this widget.
ColabSegNapariWidget.visible	Return whether widget is visible.
ColabSegNapariWidget.widget_type	Return type of widget.
ColabSegNapariWidget.width	Return the current width of the widget.

Methods

ColabSegNapariWidget.append(value)	S.append(value) -- append value to the end of the sequence
ColabSegNapariWidget.asdict()	Return state of widget as dict.
ColabSegNapariWidget.clear()
ColabSegNapariWidget.close()	Close widget.
ColabSegNapariWidget.count(value)
ColabSegNapariWidget.export_data()	Exports the point cloud data currently visualized in the napari viewer.
ColabSegNapariWidget.extend(values)	S.extend(iterable) -- extend sequence by appending elements from the iterable
ColabSegNapariWidget.from_callable(obj[, ...])	Create a Container widget from a callable object.
ColabSegNapariWidget.from_signature(sig, ...)	Create a Container widget from an inspect.Signature object.
ColabSegNapariWidget.hide()	Hide widget.
ColabSegNapariWidget.index(value[, start, stop])	Return index of a specific widget instance (or widget name).
ColabSegNapariWidget.insert(key, widget)	Insert widget at key.
ColabSegNapariWidget.load_data(data)	Loads and visualizes data from a given ColabSegData instance.
ColabSegNapariWidget.pop([index])	Raise IndexError if list is empty or index is out of range.
ColabSegNapariWidget.remove(value)	Remove a widget instance (may also be string name of widget).
ColabSegNapariWidget.render()	Return an RGBA (MxNx4) numpy array bitmap of the rendered widget.
ColabSegNapariWidget.reset_choices(*_)	Reset choices for all Categorical subWidgets to the default state.
ColabSegNapariWidget.reverse()	S.reverse() -- reverse IN PLACE
ColabSegNapariWidget.show([run])	Show widget.
ColabSegNapariWidget.shown()	Context manager to show the widget.
ColabSegNapariWidget.update([mapping])	Update the parameters in the widget from a mapping, iterable, or kwargs.